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pgatk

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software/pgatk

Python tools for proteogenomics analysis toolkit

Machine-generated from the listed sources and not yet reviewed by a human.

pgatk project image
GitHub preview card for bigbio/pgatk. Served by its origin, not stored here, and not covered by this registry’s licence.
record
Category
Software & Systems
Subcategory
unknown
License
Apache-2.0(osi)
Status
active
Maturity
deployed
Organization
bigbio
Country
unknown
Homepage
unknown
Repository
github.com/bigbio/pgatk
Documentation
unknown
Tags
ensembl · mass-spectrometry · proteogenomics · proteogenomics-analysis-toolkit · proteomics · python · vcf
Regulatory
unknown
built by · 6

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

similar by tags

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

  • PepQuerymass-spectrometry · proteogenomics · proteomics

    PepQuery: a targeted peptide search engine

  • quantmsmass-spectrometry · proteogenomics · proteomics

    Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.

  • quantms-utilsmass-spectrometry · proteogenomics · proteomics

    A python library with scripts and helpers classes for quantms workflow

  • bio-mcpensembl · proteomics

    🧬 BioMCP — 生物信息学 MCP 服务器：PubMed/NCBI/BLAST/PDB/UniProt/富集分析，让任意 AI 助手直连生物数据库。Open-source bioinformatics MCP server.

  • cyto-vendor-examplesensembl · proteomics

    Integration tests and reference examples for all external scientific data vendors used by Cyto.

  • ReproducibleMSGuidelinesmass-spectrometry · proteogenomics · proteomics

    This project aims at defining a set of guidelines for reproducible mass spectrometry-based experiments.

sources
  1. api.github.com/repos/bigbio/pgatk
    retrieved 2026-08-05 · via github-api

    Machine-imported from GitHub search. Last push 2026-05-23, 17 stars, license reported as Apache-2.0. Category and schematic were assigned by keyword heuristics and are unreviewed.

Not yet verified by a human. Correct this record →

machine-readable

/v1/entries/2.json→ .entries["pgatk"]

Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.