PyDESeq2
importedsoftware/pydeseq2
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- MIT(osi)
- Status
- active
- Maturity
- deployed
- Organization
- scverse
- Country
- unknown
- Repository
- github.com/scverse/PyDESeq2
- Documentation
- unknown
- Tags
- bioinformatics · differential-expression · python · rna-seq · transcriptomics
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- ASAPbioinformatics · differential-expression · rna-seq · transcriptomics
ASAP : Automated Single-cell Analysis Pipeline
- multiDEGGsbioinformatics · differential-expression · transcriptomics
An R package to perform differential network analysis in single and multi-omic data. It can also be used for feature selection in ML.
- oracle-scrna-seqbioinformatics · differential-expression · transcriptomics
Single-cell RNA-seq following scverse practices: QC, doublet detection, normalization, batch correction, clustering, marker genes, and cell-type annotation, with optional trajectory analysis.
- dee2bioinformatics · rna-seq · transcriptomics
Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data
- MetaInformAntbioinformatics · rna-seq · transcriptomics
METAINFORMANT is a Python 3.11+ multi-omic bioinformatics toolkit spanning 28 modules and 650+ files for DNA, RNA-seq, protein, epigenome and single-cell analysis, GWAS with fine-mapping and eQTL,…
- RNAlysisbioinformatics · rna-seq · transcriptomics
Analyze your RNA sequencing data without writing a single line of code
- api.github.com/repos/scverse/PyDESeq2retrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2026-08-03, 760 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/26.json→ .entries["pydeseq2"]
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