seq2science
importedsoftware/seq2science
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- MIT(osi)
- Status
- active
- Maturity
- deployed
- Organization
- vanheeringen-lab
- Country
- unknown
- Repository
- github.com/vanheeringen-lab/seq2science
- Documentation
- unknown
- Tags
- atac-seq · bioinformatics · bioinformatics-pipeline · chip-seq · fastq · ngs · pipeline · reproducible-research · rna-seq · snakemake · sra · workflows
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- kGWASflowbioinformatics · bioinformatics-pipeline · ngs · pipeline · snakemake
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
- deepToolsbioinformatics · chip-seq · ngs · rna-seq
Tools to process and analyze deep sequencing data.
- pygtftkbioinformatics · chip-seq · ngs · rna-seq
A python package and a set of shell commands to handle GTF files
- pysradbbioinformatics · bioinformatics-pipeline · sra
Package for fetching metadata and downloading data from SRA/ENA/GEO
- iSeqbioinformatics · ngs · sra
Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
- deepStatsatac-seq · chip-seq · rna-seq
deepStats: a stastitical toolbox for deeptools and genomic signals
- api.github.com/repos/vanheeringen-lab/seq2scienceretrieved 2026-08-25 · via github-api
Machine-imported from GitHub search. Last push 2026-06-22, 169 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/32.json→ .entries["seq2science"]
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