taxonkit

imported

software/taxonkit

A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV

Machine-generated from the listed sources and not yet reviewed by a human.

taxonkit project image — GitHub preview card for shenwei356/taxonkit. Served by its origin, not stored here, and not covered by this registry’s licence.

record

Category: Software & Systems
Subcategory: unknown
License: MIT(osi)
Status: active
Maturity: deployed
Organization: unknown
Country: unknown
Homepage: bioinf.shenwei.me/taxonkit
Repository: github.com/shenwei356/taxonkit
Documentation: unknown
Tags: bioinformatics · cross-platform · lca · lineage · taxdump · taxid · taxonkit · taxonomy
Regulatory: unknown

built by · 5

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

similar by tags

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

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Accurate sample inference from amplicon data with single nucleotide resolution
GTDBTkbioinformatics · taxonomy
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
kaijubioinformatics · taxonomy
Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
Metabulibioinformatics · taxonomy
Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.

sources

api.github.com/repos/shenwei356/taxonkit
retrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2026-07-15, 477 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.

Not yet verified by a human. Correct this record →

machine-readable

/v1/entries/5.json→ .entries["taxonkit"]

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