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FAMSA

imported

software/famsa

Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)

Machine-generated from the listed sources and not yet reviewed by a human.

FAMSA project image
GitHub preview card for refresh-bio/FAMSA. Served by its origin, not stored here, and not covered by this registry’s licence.
record
Category
Software & Systems
Subcategory
unknown
License
GPL-3.0(osi)
Status
active
Maturity
deployed
Organization
refresh-bio
Country
unknown
Homepage
unknown
Repository
github.com/refresh-bio/FAMSA
Documentation
unknown
Tags
bioinformatics · guide-tree · longest-common-subsequence · multiple-sequence-alignment · pfam · proteomics · sequence-similarity
Regulatory
unknown
built by · 6

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

similar by tags

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

  • bioinformatics-toolkitbioinformatics · pfam · proteomics

    Command-line tools for genomics and proteomics analysis

  • flexidotbioinformatics · longest-common-subsequence

    Highly customizable, ambiguity-aware dotplots for visual sequence analyses

  • kmer-dbbioinformatics · sequence-similarity

    Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).

  • ColabFoldbioinformatics · multiple-sequence-alignment

    Making Protein folding accessible to all!

  • pyfamsabioinformatics · multiple-sequence-alignment

    Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.

  • pyMSAvizbioinformatics · multiple-sequence-alignment

    MSA(Multiple Sequence Alignment) visualization python package for sequence analysis

sources
  1. api.github.com/repos/refresh-bio/FAMSA
    retrieved 2026-08-05 · via github-api

    Machine-imported from GitHub search. Last push 2026-07-20, 270 stars, license reported as GPL-3.0. Category and schematic were assigned by keyword heuristics and are unreviewed.

Not yet verified by a human. Correct this record →

machine-readable

/v1/entries/63.json→ .entries["famsa"]

Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.