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kmer-db

imported

software/kmer-db

Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).

Machine-generated from the listed sources and not yet reviewed by a human.

kmer-db project image
GitHub preview card for refresh-bio/kmer-db. Served by its origin, not stored here, and not covered by this registry’s licence.
record
Category
Software & Systems
Subcategory
unknown
License
GPL-3.0(osi)
Status
active
Maturity
deployed
Organization
refresh-bio
Country
unknown
Homepage
unknown
Repository
github.com/refresh-bio/kmer-db
Documentation
unknown
Tags
bioinformatics · genomics · indexing · k-mer · sequence-similarity
Regulatory
unknown
built by · 5

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

similar by tags

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

  • metagraphgenomics · indexing

    Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly

  • FAMSAbioinformatics · sequence-similarity

    Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)

  • kmerustbioinformatics · genomics · k-mer

    Bioinformatics 101 tool for counting unique k-length substrings in DNA

  • sketchlib.rustbioinformatics · genomics · k-mer

    Fast sequence distance estimates

  • PopPUNKgenomics · k-mer

    PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)

  • Metabulibioinformatics · k-mer

    Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.

sources
  1. api.github.com/repos/refresh-bio/kmer-db
    retrieved 2026-08-25 · via github-api

    Machine-imported from GitHub search. Last push 2026-05-14, 102 stars, license reported as GPL-3.0. Category and schematic were assigned by keyword heuristics and are unreviewed.

Not yet verified by a human. Correct this record →

machine-readable

/v1/entries/7.json→ .entries["kmer-db"]

Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.